dgit.raspbian.org Git - git-annex.git/blob

   1 [[!comment format=mdwn
   2  username="Albert"
   3  avatar="http://cdn.libravatar.org/avatar/79aaf48dabedd7cd96a9117685fbe2cc"
   4  subject="Minimal Example"
   5  date="2022-04-29T15:14:20Z"
   6  content="""
   7 I have managed to further reduce the setup to generate this bug. No connection to another device necessary.
   8
   9 Steps:
  10
  11 * Create a fresh repository with `git annex webapp`
  12 * Add an empty file to the repository named `exec.zip`
  13
  14 Now the repository is broken.
  15
  16 ```bash
  17 ❯ ls
  18 exec.zip
  19 ❯ git annex repair
  20 repair Running git fsck ...
  21 Fsck found no problems. Checking for broken branches.
  22 Found problems, attempting repair.
  23 Some git branches refer to missing objects:
  24         refs/annex/last-index
  25 To force a recovery to a usable state, retry with the --force parameter.
  26 failed
  27 repair: 1 failed
  28 ❯ git annex repair --force
  29 repair Running git fsck ...
  30 Fsck found no problems. Checking for broken branches.
  31 Found problems, attempting repair.
  32 Successfully recovered repository!
  33 You should run \"git fsck\" to make sure, but it looks like everything was recovered ok.
  34 ok
  35 ❯ git fsck
  36 Checking object directories: 100% (256/256), done.
  37 ❯ git annex fsck
  38 fsck exec.zip (checksum...) ok
  39 (recording state in git...)
  40 ❯ git annex repair
  41 repair Running git fsck ...
  42 Fsck found no problems. Checking for broken branches.
  43 Found problems, attempting repair.
  44 Some git branches refer to missing objects:
  45         refs/annex/last-index
  46 To force a recovery to a usable state, retry with the --force parameter.
  47 failed
  48 repair: 1 failed
  49 ```
  50
  51 The log shows nothing interesting, as far as errors go.
  52
  53 ```bash
  54 [2022-04-29 16:52:08.770880358] (Utility.Process) process [8244] chat: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"cat-file\",\"--batch\"]
  55 [2022-04-29 16:52:08.773934773] (Utility.Process) process [8245] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"ls-files\",\"--stage\",\"-z\",\"--\",\".\"]
  56 [2022-04-29 16:52:08.775028928] (Utility.Process) process [8245] done ExitSuccess
  57 [2022-04-29 16:52:08.775560498] (Utility.Process) process [8246] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"ls-files\",\"--stage\",\"-z\",\"--\",\".\"]
  58 [2022-04-29 16:52:08.77720598] (Utility.Process) process [8246] done ExitSuccess
  59 [2022-04-29 16:52:08.77980743] (Utility.Process) process [8247] chat: nice [\"ionice\",\"-c3\",\"/usr/bin/git-annex\",\"remotedaemon\",\"--foreground\"]
  60 [2022-04-29 16:52:08.831064871] (NetWatcher) Using running DBUS service org.freedesktop.NetworkManager to monitor network connection events.
  61 [2022-04-29 16:52:08.83204466] (MountWatcher) Using running DBUS service org.freedesktop.UDisks2 to monitor mount events.
  62 [2022-04-29 16:52:08.834446186] (Utility.Process) process [8248] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"ls-tree\",\"--full-tree\",\"-z\",\"--\",\"refs/heads/git-annex\",\"uuid.log\",\"remote.log\",\"trust.log\",\"group.log\",\"numcopies.log\",\"mincopies.log\",\"schedule.log\",\"preferred-content.log\",\"required-content.log\",\"group-preferred-content.log\"]
  63 [2022-04-29 16:52:08.835869051] (Utility.Process) process [8248] done ExitSuccess
  64 [2022-04-29 16:52:08.83662762] (Utility.Process) process [8249] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"show-ref\",\"git-annex\"]
  65 [2022-04-29 16:52:08.836789466] (TransferWatcher) watching for transfers
  66 [2022-04-29 16:52:08.837846991] (Utility.Process) process [8249] done ExitSuccess
  67 [2022-04-29 16:52:08.838365064] (Utility.Process) process [8250] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"show-ref\",\"--hash\",\"refs/heads/git-annex\"]
  68 [2022-04-29 16:52:08.839508977] (Utility.Process) process [8250] done ExitSuccess
  69 [2022-04-29 16:52:08.83982672] (Utility.Process) process [8251] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"log\",\"refs/heads/git-annex..8d3e39db152fe946720fc814daaa892ea9b5ae56\",\"--pretty=%H\",\"-n1\"]
  70 [2022-04-29 16:52:08.841105024] (Utility.Process) process [8251] done ExitSuccess
  71 [2022-04-29 16:52:08.841851852] (Utility.Process) process [8252] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"ls-tree\",\"--full-tree\",\"-z\",\"--\",\"refs/heads/git-annex\",\"uuid.log\",\"remote.log\",\"trust.log\",\"group.log\",\"numcopies.log\",\"mincopies.log\",\"schedule.log\",\"preferred-content.log\",\"required-content.log\",\"group-preferred-content.log\"]
  72 [2022-04-29 16:52:08.843105261] (Utility.Process) process [8252] done ExitSuccess
  73 [2022-04-29 16:52:08.843428605] (Utility.Process) process [8253] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"symbolic-ref\",\"-q\",\"HEAD\"]
  74 [2022-04-29 16:52:08.844400262] (Utility.Process) process [8253] done ExitSuccess
  75 [2022-04-29 16:52:08.844653432] (Utility.Process) process [8254] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"show-ref\",\"refs/heads/adjusted/master(unlocked)\"]
  76 [2022-04-29 16:52:08.845849783] (Utility.Process) process [8254] done ExitSuccess
  77 (scanning...) [2022-04-29 16:52:08.848533041] (Merger) watching .git/refs
  78 [2022-04-29 16:52:08.848937085] (Utility.Process) process [8255] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"ls-files\",\"-z\",\"--deleted\",\"--\",\".\"]
  79 [2022-04-29 16:52:08.850610811] (Utility.Process) process [8255] done ExitSuccess
  80 (started...)
  81 [2022-04-29 16:52:08.85076117] (Watcher) watching .
  82 [2022-04-29 16:52:10.784464555] (TransferScanner) starting scan of [Remote { name =\"bittorrent\" },Remote { name =\"web\" }]
  83 [2022-04-29 16:52:10.786005379] (Utility.Process) process [8266] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"ls-files\",\"-z\",\"--cached\",\"--\"]
  84 [2022-04-29 16:52:10.78835403] (Utility.Process) process [8266] done ExitSuccess
  85 [2022-04-29 16:52:10.788482208] (TransferScanner) finished scan of [Remote { name =\"bittorrent\" },Remote { name =\"web\" }]
  86 [2022-04-29 16:52:38.780947807] (Utility.Process) process [8244] done ExitSuccess
  87 [2022-04-29 16:52:48.957820025] (Utility.Process) process [8373] chat: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"cat-file\",\"--batch-check=%(objectname) %(objecttype) %(objectsize)\"]
  88 [2022-04-29 16:52:48.961668832] (Utility.Process) process [8374] chat: git [\"--git-dir=.git\",\"--work-tree=.\",\"check-ignore\",\"-z\",\"--stdin\",\"--verbose\",\"--non-matching\"]
  89 [2022-04-29 16:52:48.96311124] (Watcher) add exec.zip
  90 [2022-04-29 16:52:48.963830706] (Watcher) add exec.zip
  91 [2022-04-29 16:52:48.974374383] (Utility.Process) process [8380] read: lsof [\"-F0can\",\"+d\",\".git/annex/watchtmp/\"]
  92 lsof: WARNING: can't stat() fuse.portal file system /run/user/1000/doc
  93       Output information may be incomplete.
  94 [2022-04-29 16:52:49.063916257] (Utility.Process) process [8380] done ExitFailure 1
  95 [2022-04-29 16:52:49.0643913] (Utility.Process) process [8391] chat: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"check-attr\",\"-z\",\"--stdin\",\"annex.backend\",\"annex.largefiles\",\"annex.numcopies\",\"annex.mincopies\",\"--\"]
  96 add exec.zip [2022-04-29 16:52:49.067319092] (Utility.Process) process [8392] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"-c\",\"filter.annex.smudge=\",\"-c\",\"filter.annex.clean=\",\"-c\",\"filter.annex.process=\",\"write-tree\"]
  97 [2022-04-29 16:52:49.068674137] (Utility.Process) process [8392] done ExitSuccess
  98 [2022-04-29 16:52:49.069809159] (Utility.Process) process [8393] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"show-ref\",\"--hash\",\"refs/annex/last-index\"]
  99 [2022-04-29 16:52:49.071868139] (Utility.Process) process [8393] done ExitFailure 1
 100 [2022-04-29 16:52:49.086327935] (Utility.Process) process [8394] chat: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"cat-file\",\"--batch\"]
 101 [2022-04-29 16:52:49.089453108] (Utility.Process) process [8395] chat: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"hash-object\",\"-w\",\"--stdin-paths\",\"--no-filters\"]
 102 ok
 103 [2022-04-29 16:52:49.091145891] (Committer) committing 1 changes
 104 (recording state in git...)
 105 [2022-04-29 16:52:49.091604661] (Utility.Process) process [8396] feed: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"update-index\",\"-z\",\"--index-info\"]
 106 [2022-04-29 16:52:49.093194636] (Utility.Process) process [8396] done ExitSuccess
 107 [2022-04-29 16:52:49.093559897] (Utility.Process) process [8397] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"symbolic-ref\",\"-q\",\"HEAD\"]
 108 [2022-04-29 16:52:49.094699948] (Utility.Process) process [8397] done ExitSuccess
 109 [2022-04-29 16:52:49.095498501] (Utility.Process) process [8398] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"show-ref\",\"--hash\",\"refs/heads/adjusted/master(unlocked)\"]
 110 [2022-04-29 16:52:49.096545809] (Utility.Process) process [8398] done ExitSuccess
 111 [2022-04-29 16:52:49.096818906] (Utility.Process) process [8399] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"write-tree\"]
 112 [2022-04-29 16:52:49.098254637] (Utility.Process) process [8399] done ExitSuccess
 113 [2022-04-29 16:52:49.099010966] (Utility.Process) process [8400] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"rev-parse\",\"--verify\",\"--quiet\",\"fe77efb32c94158eff6697b39cb344f45584102a:\"]
 114 [2022-04-29 16:52:49.100061557] (Utility.Process) process [8400] done ExitSuccess
 115 [2022-04-29 16:52:49.100317245] (Utility.Process) process [8401] chat: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"commit-tree\",\"5234be1a3bf0adce43729baa1497a560b7cbebd7\",\"--no-gpg-sign\",\"-p\",\"fe77efb32c94158eff6697b39cb344f45584102a\"]
 116 [2022-04-29 16:52:49.101685356] (Utility.Process) process [8401] done ExitSuccess
 117 [2022-04-29 16:52:49.102371807] (Utility.Process) process [8402] call: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"update-ref\",\"refs/heads/adjusted/master(unlocked)\",\"4be985a06abd216c02f2fdd03ca40a85807bb96b\"]
 118 [2022-04-29 16:52:49.103729957] (Utility.Process) process [8402] done ExitSuccess
 119 [2022-04-29 16:52:49.10456259] (Utility.Process) process [8403] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"show-ref\",\"--hash\",\"refs/basis/adjusted/master(unlocked)\"]
 120 [2022-04-29 16:52:49.105752856] (Utility.Process) process [8403] done ExitSuccess
 121 [2022-04-29 16:52:49.106040828] (Utility.Process) process [8404] chat: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"cat-file\",\"--batch\"]
 122 [2022-04-29 16:52:49.107590591] (Utility.Process) process [8405] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"log\",\"refs/basis/adjusted/master(unlocked)..refs/heads/adjusted/master(unlocked)\",\"--pretty=%H\",\"--reverse\"]
 123 [2022-04-29 16:52:49.108889132] (Utility.Process) process [8405] done ExitSuccess
 124 [2022-04-29 16:52:49.110083161] (Utility.Process) process [8406] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"show\",\"-z\",\"--raw\",\"--no-renames\",\"-l0\",\"--no-abbrev\",\"--pretty=\",\"--raw\",\"4be985a06abd216c02f2fdd03ca40a85807bb96b\"]
 125 [2022-04-29 16:52:49.113120499] (Utility.Process) process [8407] chat: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"mktree\",\"--batch\",\"-z\"]
 126 [2022-04-29 16:52:49.113389197] (Utility.Process) process [8408] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"ls-tree\",\"--full-tree\",\"-z\",\"-r\",\"-t\",\"--\",\"c57819725af0809e4a82dd79efc9cb398e9b5f5e\"]
 127 [2022-04-29 16:52:49.115008909] (Utility.Process) process [8408] done ExitSuccess
 128 [2022-04-29 16:52:49.115220429] (Utility.Process) process [8407] done ExitSuccess
 129 [2022-04-29 16:52:49.115274136] (Utility.Process) process [8406] done ExitSuccess
 130 [2022-04-29 16:52:49.116504243] (Utility.Process) process [8409] chat: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"commit-tree\",\"1ea671eeef97631e93e128bf3ebe8a6d26ea5c26\",\"--no-gpg-sign\",\"-p\",\"c57819725af0809e4a82dd79efc9cb398e9b5f5e\"]
 131 [2022-04-29 16:52:49.118748333] (Utility.Process) process [8409] done ExitSuccess
 132 [2022-04-29 16:52:49.119085462] (Utility.Process) process [8410] call: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"update-ref\",\"refs/basis/adjusted/master(unlocked)\",\"c5dc2761bf626f373d382e2e137a030d54cb830f\"]
 133 [2022-04-29 16:52:49.120787007] (Utility.Process) process [8410] done ExitSuccess
 134 [2022-04-29 16:52:49.121084941] (Utility.Process) process [8411] call: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"update-ref\",\"refs/heads/master\",\"c5dc2761bf626f373d382e2e137a030d54cb830f\"]
 135 [2022-04-29 16:52:49.122396315] (Utility.Process) process [8411] done ExitSuccess
 136 [2022-04-29 16:52:49.123421452] (Utility.Process) process [8412] chat: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"commit-tree\",\"5234be1a3bf0adce43729baa1497a560b7cbebd7\",\"--no-gpg-sign\",\"-p\",\"c5dc2761bf626f373d382e2e137a030d54cb830f\"]
 137 [2022-04-29 16:52:49.125285001] (Utility.Process) process [8412] done ExitSuccess
 138 [2022-04-29 16:52:49.125594743] (Utility.Process) process [8413] call: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"update-ref\",\"-m\",\"rebasing adjusted branch on top of updated original branch\",\"refs/heads/adjusted/master(unlocked)\",\"5e2aa046891e88e6272556602fd783df737dd96b\"]
 139 [2022-04-29 16:52:49.127414941] (Utility.Process) process [8413] done ExitSuccess
 140 [2022-04-29 16:52:49.127755666] (Utility.Process) process [8414] call: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"branch\",\"-f\",\"synced/master\",\"refs/heads/master\"]
 141 [2022-04-29 16:52:49.129567194] (Utility.Process) process [8414] done ExitSuccess
 142 [2022-04-29 16:52:49.130874993] (Utility.Process) process [8415] feed: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"update-index\",\"-z\",\"--index-info\"]
 143 [2022-04-29 16:52:49.13224422] (Utility.Process) process [8415] done ExitSuccess
 144 [2022-04-29 16:52:49.132752938] (Utility.Process) process [8416] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"show-ref\",\"--hash\",\"refs/heads/git-annex\"]
 145 [2022-04-29 16:52:49.134298542] (Utility.Process) process [8416] done ExitSuccess
 146 (recording state in git...)
 147 [2022-04-29 16:52:49.134910162] (Utility.Process) process [8417] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"write-tree\"]
 148 [2022-04-29 16:52:49.136629434] (Utility.Process) process [8417] done ExitSuccess
 149 [2022-04-29 16:52:49.137062879] (Utility.Process) process [8418] chat: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"commit-tree\",\"fdebaeafd3e1ebbc439d1a74184ff97e53071472\",\"--no-gpg-sign\",\"-p\",\"refs/heads/git-annex\"]
 150 [2022-04-29 16:52:49.138527773] (Utility.Process) process [8418] done ExitSuccess
 151 [2022-04-29 16:52:49.13896562] (Utility.Process) process [8419] call: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"update-ref\",\"refs/heads/git-annex\",\"127321afb17f5281528fc71d54c9166ce177596c\"]
 152 [2022-04-29 16:52:49.140314152] (Utility.Process) process [8419] done ExitSuccess
 153 [2022-04-29 16:52:49.143236655] (Utility.Process) process [8420] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"log\",\"refs/heads/master..refs/heads/synced/master\",\"--pretty=%H\",\"-n1\"]
 154 [2022-04-29 16:52:49.144619131] (Utility.Process) process [8420] done ExitSuccess
 155 [2022-04-29 16:52:49.144959688] (Utility.Process) process [8421] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"show-ref\",\"git-annex\"]
 156 [2022-04-29 16:52:49.146275708] (Utility.Process) process [8421] done ExitSuccess
 157 [2022-04-29 16:52:49.146554643] (Utility.Process) process [8422] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"show-ref\",\"--hash\",\"refs/heads/git-annex\"]
 158 [2022-04-29 16:52:49.147803214] (Utility.Process) process [8422] done ExitSuccess
 159 [2022-04-29 16:52:49.148107921] (Utility.Process) process [8423] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"log\",\"refs/heads/git-annex..127321afb17f5281528fc71d54c9166ce177596c\",\"--pretty=%H\",\"-n1\"]
 160 [2022-04-29 16:52:49.149518193] (Utility.Process) process [8423] done ExitSuccess
 161 [2022-04-29 16:53:08.845070487] (Utility.Process) process [8451] read: git [\"--git-dir=.git\",\"--work-tree=.\",\"--literal-pathspecs\",\"ls-tree\",\"--full-tree\",\"-z\",\"--\",\"refs/heads/git-annex\",\"uuid.log\",\"remote.log\",\"trust.log\",\"group.log\",\"numcopies.log\",\"mincopies.log\",\"schedule.log\",\"preferred-content.log\",\"required-content.log\",\"group-preferred-content.log\"]
 162 [2022-04-29 16:53:08.848424429] (Utility.Process) process [8451] done ExitSuccess
 163 ```
 164
 165 Why causes a single file `git annex repair` to fail?
 166 """]]